Journal: Iranian Journal of Biotechnology

Article Title: Research on Circular RNA Expression Profiles in the Photoaging Mouse Model

doi: 10.30498/ijb.2023.351439.3445

Figure Lengend Snippet: Differentially expressed circRNAs in the UV group and control group. A) The box plot shows the variations in circRNA expression. B) The scatter plot and the volcano plot. C) Illustrate the distributions of the data in the circRNA profiles (FC>1.5; P<0.05). D) The result from hierarchical clustering shows a distinguishable circRNA expression profiling among samples. The heat map shows the differentially expressed circRNAs in samples. Each group consists of three samples. T, UVA+UVB treated group; N, Control group; circRNA, circular RNA; FC, fold change.

Article Snippet: The labeled cRNA was hybridized with Arraystar Mouse circRNA Arrays V2.0 (8X15K; Arraystar, Inc.USA) and incubated in an Agilent hybridization oven (Agilent Technologies, Inc.USA) at 65 °C for 17 hours.

Techniques: Control, Expressing

Journal: Iranian Journal of Biotechnology

Article Title: Research on Circular RNA Expression Profiles in the Photoaging Mouse Model

doi: 10.30498/ijb.2023.351439.3445

Figure Lengend Snippet: CircRNAs are differentially expressed following UVA and UVB treatment.

Article Snippet: The labeled cRNA was hybridized with Arraystar Mouse circRNA Arrays V2.0 (8X15K; Arraystar, Inc.USA) and incubated in an Agilent hybridization oven (Agilent Technologies, Inc.USA) at 65 °C for 17 hours.

Techniques:

Journal: Heliyon

Article Title: RNA sequence analysis landscape: A comprehensive review of task types, databases, datasets, word embedding methods, and language models

doi: 10.1016/j.heliyon.2024.e41488

Figure Lengend Snippet: A Summary of Publicly Accessible Biological Databases, their Inherent Data Types, Species Diversity, and Statistics of Raw Sequences Related to Different Genomic and Proteomic Data.

Article Snippet: LncRNADisease v2.0 , 2018 , lncRNAs, circRNAs , Animal, Homo sapiens, Mus musculus, Rattus norvegicus, Gallus gallus , _ , 19,166 lncRNAs, 823 circRNAs, 529 diseases, 205,959 lncRNA-disease associations, 1004 circRNA-disease associations , .xlsx.

Techniques: Immunopeptidomics, Mutagenesis, Binding Assay, RNA modification, Functional Assay, Quantitative Proteomics, Virus, Bacteria, Next-Generation Sequencing

Journal: Heliyon

Article Title: RNA sequence analysis landscape: A comprehensive review of task types, databases, datasets, word embedding methods, and language models

doi: 10.1016/j.heliyon.2024.e41488

Figure Lengend Snippet: Summary of Uniquely Pre-trained Language Models along with pre-training Data for RNA Sequence Analysis Tasks.

Article Snippet: LncRNADisease v2.0 , 2018 , lncRNAs, circRNAs , Animal, Homo sapiens, Mus musculus, Rattus norvegicus, Gallus gallus , _ , 19,166 lncRNAs, 823 circRNAs, 529 diseases, 205,959 lncRNA-disease associations, 1004 circRNA-disease associations , .xlsx.

Techniques: Sequencing, Virus, Derivative Assay

Journal: Heliyon

Article Title: RNA sequence analysis landscape: A comprehensive review of task types, databases, datasets, word embedding methods, and language models

doi: 10.1016/j.heliyon.2024.e41488

Figure Lengend Snippet: Non-coding RNA target prediction related 4 distinct RNA sequence analysis tasks predictive pipelines performance.

Article Snippet: LncRNADisease v2.0 , 2018 , lncRNAs, circRNAs , Animal, Homo sapiens, Mus musculus, Rattus norvegicus, Gallus gallus , _ , 19,166 lncRNAs, 823 circRNAs, 529 diseases, 205,959 lncRNA-disease associations, 1004 circRNA-disease associations , .xlsx.

Techniques: Sequencing, Control, Small Interfering RNA